The method of determining the biobased carbon content in liquid fuel samples is standardized, but different laboratories use different protocols during sample preparation and perform the measurements using different machines. The accelerator mass spectrometry (AMS) laboratories use different combustion, preparation, and graphitization methods for the graphite production for the spectrometric measurements. As a result, the intercomparison between the laboratories is inevitable to prove precision and accuracy and to demonstrate that the results are comparable. In this study, we present the results of an intercomparison campaign involving three 14C accelerator mass spectrometry laboratories. Five samples were used in the measurement campaign, including two biocomponents (fatty acid methyl ester, hydrotreated vegetable oil), one fossil component (fossil diesel), and two blends (mixtures of fossil and biocomponent with 90–10% mixing ratio) in the laboratories of CEDAD (Italy), ETH (Switzerland), and INTERACT (Hungary). The results presented by the laboratories are comparable, and all three laboratories could determine the biobased carbon content of the samples within 1% relative uncertainty, which is acceptable in the scientific, economic, and industrial fields for biocomponent determination.